PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g16610.3
Common NameLR48_Vigan02g127900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 326aa    MW: 37730.7 Da    PI: 8.0168
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g16610.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-08118159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE e l ++ +q+G++ W+ +a  +g  + + ++k+ w+ +
   Vang06g16610.3 118 KWTPEEYEFLRKVKEQHGSN-WRQVADALG--KNRIHVKDAWRRV 159
                      8*****************99.********9..6788899988865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-642106IPR009057Homeodomain-like
SMARTSM007170.002242113IPR001005SANT/Myb domain
PROSITE profilePS500904.3145111IPR017877Myb-like domain
PROSITE profilePS512949.282113164IPR017930Myb domain
SMARTSM007170.0029115162IPR001005SANT/Myb domain
SuperFamilySSF466898.58E-10117177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-10118170IPR009057Homeodomain-like
PfamPF139211.6E-12119177No hitNo description
PROSITE profilePS500907.654161230IPR017877Myb-like domain
SMARTSM007179.1E-4165232IPR001005SANT/Myb domain
CDDcd001675.21E-4168227No hitNo description
Gene3DG3DSA:1.10.10.602.6E-8171232IPR009057Homeodomain-like
SuperFamilySSF466895.47E-8210290IPR009057Homeodomain-like
PROSITE profilePS500908.188232285IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.6E-4233286IPR009057Homeodomain-like
SMARTSM0071712236287IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTKKETKADN DESPNPACSG LSKPKRVTFS DQVEVCCDGL VRGKRFTLEE DEQIKSAVYN  60
FIESRGLGDE GLDMVLHCSS HPEVRSCWNE IAAALPHRPK NSVYTRAHIL FERSEMRKWT  120
PEEYEFLRKV KEQHGSNWRQ VADALGKNRI HVKDAWRRVK LRNTNKGRWT QEEYQKLFDL  180
VNLDLRVRAS QGYRKSKHGM LRDNIGWEAI GDKLVTRTSV SCCHKWYDKL RSPMVATGAW  240
SDTDDYRLVD ALYNLDACCT EEVDWDDLLE HRTGEACRKR WNQIVRYIGD HGGKSFSEQV  300
EILAKRYCPN LLEVREAFDA KPLVC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541381.20.0PREDICTED: RNA polymerase I termination factor
RefseqXP_006594063.10.0PREDICTED: RNA polymerase I termination factor
RefseqXP_006594064.10.0PREDICTED: RNA polymerase I termination factor
TrEMBLA0A0L9TY640.0A0A0L9TY64_PHAAN; Uncharacterized protein
STRINGGLYMA13G19060.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-120MYB_related family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]